EnhancerDB
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  3. rs544199039[chr16:85345097]
Enhancers that have rs544199039[chr16:85345097]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85333005 85372015 enh16866
Bone Marrow (K562) Brain (SK-N-MC) Liver Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr16 85344973 85345172 vista23291
VISTA
Transcript factors that have rs544199039[chr16:85345097]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85342596 85345224 ZNF143 GTRD no Epithelial (MCF-7) 21723116
chr16 85342596 85345224 ZNF143 GTRD no Epithelial (MCF-7) 108213643
chr16 85342596 85345224 ZNF143 GTRD no Epithelial (MCF-7) 108213644
chr16 85342596 85345224 ZNF143 GTRD no Epithelial (MCF-7) 108213645
chr16 85342680 85345212 TCF7L2 GTRD no Colon (HCT116) 21723117
chr16 85342680 85345212 TCF7L2 GTRD no Colon (HCT116) 108213646
chr16 85342680 85345212 TCF7L2 GTRD no Colon (HCT116) 108213647
chr16 85342680 85345212 TCF7L2 GTRD no Colon (HCT116) 108213648
chr16 85343800 85345351 TCF7L2 GTRD no Colon (HCT116) 21723122
chr16 85343800 85345351 TCF7L2 GTRD no Colon (HCT116) 108213662
chr16 85343800 85345351 TCF7L2 GTRD no Colon (HCT116) 108213663
chr16 85343800 85345351 TCF7L2 GTRD no Colon (HCT116) 108213664
chr16 85343823 85345163 ZNF143 GTRD no Epithelial (MCF-7) 21723123
chr16 85343823 85345163 ZNF143 GTRD no Epithelial (MCF-7) 108213665
chr16 85343823 85345163 ZNF143 GTRD no Epithelial (MCF-7) 108213666
chr16 85343854 85345163 ZNF143 GTRD no Epithelial (MCF-7) 21723125
chr16 85343854 85345163 ZNF143 GTRD no Epithelial (MCF-7) 108213668
chr16 85343854 85345163 ZNF143 GTRD no Epithelial (MCF-7) 108213669
chr16 85343854 85345165 TCF7L2 GTRD no Colon (HCT116) 21723126
chr16 85343854 85345165 TCF7L2 GTRD no Colon (HCT116) 108213670
chr16 85343854 85345165 TCF7L2 GTRD no Colon (HCT116) 108213671
chr16 85343858 85345192 ZNF143 GTRD no Epithelial (MCF-7) 21723127
chr16 85343858 85345192 ZNF143 GTRD no Epithelial (MCF-7) 108213672
chr16 85343858 85345192 ZNF143 GTRD no Epithelial (MCF-7) 108213673
chr16 85344439 85345153 TCF7L2 GTRD no Colon (HCT116) 21723133
chr16 85344439 85345153 TCF7L2 GTRD no Colon (HCT116) 108213679
chr16 85344515 85345252 ZNF143 GTRD no Epithelial (MCF-7) 21723136
chr16 85344515 85345252 ZNF143 GTRD no Epithelial (MCF-7) 108213681
chr16 85344597 85345321 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21723139
chr16 85344597 85345321 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108213682
chr16 85344680 85345452 ZNF274 GTRD no Bone Marrow (K562) 21723142
chr16 85344680 85345452 ZNF274 GTRD no Bone Marrow (K562) 108213684
chr16 85344699 85345252 TCF7L2 GTRD no Colon (HCT116) 21723143
chr16 85344699 85345252 TCF7L2 GTRD no Colon (HCT116) 108213685
chr16 85344878 85345188 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21723144
chr16 85344878 85345188 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108213686
chr16 85344956 85345200 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21723145
chr16 85344956 85345200 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108213687
chr16 85345085 85345099 ZIC1 JASPAR yes 12045691
chr16 85345085 85345099 ZIC1 JASPAR yes 49407519
chr16 85345085 85345100 ZIC3 JASPAR yes 12045692
chr16 85345085 85345100 ZIC3 JASPAR yes 49407520
chr16 85345092 85345097 MYC TRANSFAC yes 12045693
chr16 85345092 85345097 MYC TRANSFAC yes 49407521
Genes associated with rs544199039[chr16:85345097], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More