EnhancerDB
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  3. rs545289979[chr17:55609890]
Enhancers that have rs545289979[chr17:55609890]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55607567 55641035 enh4490
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Stomach Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Blood (GM12878) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs545289979[chr17:55609890]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55609887 55609899 IRF1 JASPAR yes 54965463
chr17 55609889 55609895 TCF4 TRANSFAC yes 54965464
chr17 55609889 55609904 FOXP1 JASPAR yes 54965465
Genes associated with rs545289979[chr17:55609890], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More