EnhancerDB
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  3. rs546215862[chr17:62967955]
Enhancers that have rs546215862[chr17:62967955]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62953485 63000035 enh4531
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs546215862[chr17:62967955]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62961826 62968116 ZNF143 GTRD no Epithelial (MCF-7) 21780084
chr17 62961826 62968116 ZNF143 GTRD no Epithelial (MCF-7) 108282998
chr17 62965034 62968138 ZBTB33 GTRD no Lung (A549) 21780233
chr17 62965034 62968138 ZBTB33 GTRD no Lung (A549) 108283011
chr17 62965039 62968087 ZBTB33 GTRD no Lung (A549) 21780234
chr17 62965039 62968087 ZBTB33 GTRD no Lung (A549) 108283012
chr17 62965505 62967978 ZNF274 GTRD no Bone Marrow (K562) 21780272
chr17 62965505 62967978 ZNF274 GTRD no Bone Marrow (K562) 108283041
chr17 62965673 62968211 ZNF274 GTRD no Cervix (HeLa-S3) 21780321
chr17 62965673 62968211 ZNF274 GTRD no Cervix (HeLa-S3) 108283082
chr17 62966475 62968033 ZBTB33 GTRD no Lung (A549) 21780365
chr17 62966518 62969728 ZBTB33 GTRD no Lung (A549) 21780368
chr17 62966542 62969569 ZNF143 GTRD no Epithelial (MCF-7) 21780369
chr17 62966595 62968047 ZBTB33 GTRD no Lung (A549) 21780372
chr17 62966602 62969622 AR GTRD no Prostate (PC-3) 21780373
chr17 62966603 62967993 ZBTB33 GTRD no Lung (A549) 21780374
chr17 62966698 62968103 ZBTB33 GTRD no Brain (SK-N-SH) 21780377
chr17 62966708 62968225 ZNF274 GTRD no Bone Marrow (K562) 21780378
chr17 62966730 62969435 ZBTB33 GTRD no Lung (A549) 21780379
chr17 62966736 62968047 ZNF274 GTRD no Cervix (HeLa-S3) 21780380
chr17 62966769 62968960 ZNF274 GTRD no Cervix (HeLa-S3) 21780382
chr17 62967599 62968879 ZBTB33 GTRD no Brain (SK-N-SH) 21780397
chr17 62967663 62969113 ZBTB33 GTRD no Lung (A549) 21780398
chr17 62967771 62969082 ZBTB33 GTRD no Brain (SK-N-SH) 21780399
chr17 62967925 62969679 ZBTB33 GTRD no Lung (A549) 21780400
chr17 62967951 62967960 NKX3-2 JASPAR yes 55333306
Genes associated with rs546215862[chr17:62967955], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More