EnhancerDB
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  3. rs546220[chr15:40379260]
Enhancers that have rs546220[chr15:40379260]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr15 40353665 40379655 enh16061
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs546220[chr15:40379260]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr15 40379054 40379417 ZNF274 GTRD no Bone Marrow (K562) 21650179
chr15 40379097 40379354 ZNF274 GTRD no Liver (HepG2) 21650180
chr15 40379194 40380285 ZNF274 GTRD no Bone Marrow (K562) 21650181
chr15 40379218 40380340 ZNF274 GTRD no Bone Marrow (K562) 21650182
chr15 40379251 40379264 NFKB2 JASPAR yes 22928663
chr15 40379257 40380171 ZNF274 GTRD no Bone Marrow (K562) 21650183
chr15 40379258 40379268 ZNF740 JASPAR yes 22928664
Genes associated with rs546220[chr15:40379260], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr15 40453224 40513337 + BUB1B ENSG00000156970.8 40453224 73964 Uterus 0.356947 13801