EnhancerDB
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  3. rs546597212[chr1:204254584]
Enhancers that have rs546597212[chr1:204254584]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204245511 204275535 enh12577
Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs546597212[chr1:204254584]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204253317 204256076 ZNF143 GTRD no Epithelial (MCF-7) 21370352
chr1 204253317 204256076 ZNF143 GTRD no Epithelial (MCF-7) 107859792
chr1 204253317 204256076 ZNF143 GTRD no Epithelial (MCF-7) 107859793
chr1 204253650 204255004 ZNF274 GTRD no Liver (HepG2) 21370353
chr1 204253650 204255004 ZNF274 GTRD no Liver (HepG2) 107859794
chr1 204253704 204255221 AR GTRD no Prostate (PC-3) 21370354
chr1 204253704 204255221 AR GTRD no Prostate (PC-3) 107859795
chr1 204253875 204255030 TEF1 GTRD no Bone (Osteoblast) 21370355
chr1 204253875 204255030 TEF1 GTRD no Bone (Osteoblast) 107859796
chr1 204253876 204255019 ZNF143 GTRD no Epithelial (MCF-7) 21370356
chr1 204253876 204255019 ZNF143 GTRD no Epithelial (MCF-7) 107859797
chr1 204254565 204254585 RREB1 JASPAR yes 34688152
chr1 204254568 204254588 RREB1 JASPAR yes 34688153
chr1 204254570 204254590 RREB1 JASPAR yes 34688155
chr1 204254571 204254591 RREB1 JASPAR yes 34688156
chr1 204254574 204254594 RREB1 JASPAR yes 34688157
chr1 204254578 204254598 RREB1 JASPAR yes 34688158
chr1 204254580 204254600 RREB1 JASPAR yes 34688159
chr1 204254581 204254601 RREB1 JASPAR yes 34688160
chr1 204254581 204254602 IRF1 JASPAR yes 34688161
chr1 204254584 204254604 RREB1 JASPAR yes 34688162
Genes associated with rs546597212[chr1:204254584], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More