EnhancerDB
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  3. rs546733540[chr1:27063404]
Enhancers that have rs546733540[chr1:27063404]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27058625 27079175 enh167
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs546733540[chr1:27063404]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27063390 27063405 FOXP1 JASPAR yes 27654320
chr1 27063391 27063406 FOXP1 JASPAR yes 27654321
chr1 27063392 27063407 FOXP1 JASPAR yes 27654322
chr1 27063392 27063413 IRF1 JASPAR yes 27654323
chr1 27063393 27063408 FOXP1 JASPAR yes 27654324
chr1 27063393 27063414 IRF1 JASPAR yes 27654325
chr1 27063394 27063409 FOXP1 JASPAR yes 27654326
chr1 27063394 27063415 IRF1 JASPAR yes 27654327
chr1 27063395 27063410 FOXP1 JASPAR yes 27654328
chr1 27063395 27063416 IRF1 JASPAR yes 27654329
chr1 27063396 27063411 FOXP1 JASPAR yes 27654330
chr1 27063397 27063412 FOXP1 JASPAR yes 27654331
chr1 27063398 27063413 FOXP1 JASPAR yes 27654332
chr1 27063398 27063419 IRF1 JASPAR yes 27654333
chr1 27063399 27063414 FOXP1 JASPAR yes 27654334
chr1 27063402 27063417 STAT2 JASPAR yes 27654335
Genes associated with rs546733540[chr1:27063404], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More