EnhancerDB
  1. Home
  2. SNP
  3. rs546879342[chr1:27461549]
Enhancers that have rs546879342[chr1:27461549]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27456674 27477960 enh171
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs546879342[chr1:27461549]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27461540 27461550 NFIA JASPAR yes 27680206
chr1 27461549 27461564 FOXP1 JASPAR yes 27680208
Genes associated with rs546879342[chr1:27461549], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More