EnhancerDB
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  3. rs548407620[chr6:35636235]
Enhancers that have rs548407620[chr6:35636235]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 35628505 35648095 enh9080
Skin (Keratinocyte) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Liver Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422) Muscle (Myoblast) Pancreas Neural Stem Cells (H9) Thymus Stomach
Transcript factors that have rs548407620[chr6:35636235]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 35636226 35636241 SOX21 JASPAR yes 101301479
chr6 35636232 35636243 PHOX2A JASPAR yes 101301480
chr6 35636232 35636243 PROP1 JASPAR yes 101301481
chr6 35636232 35636246 ONECUT1 JASPAR yes 101301482
chr6 35636232 35636246 ONECUT2 JASPAR yes 101301483
chr6 35636232 35636246 ONECUT3 JASPAR yes 101301484
chr6 35636233 35636243 CUX1 JASPAR yes 101301485
chr6 35636233 35636243 CUX2 JASPAR yes 101301486
chr6 35636233 35636243 PAX3 JASPAR yes 101301487
chr6 35636233 35636243 PAX7 JASPAR yes 101301488
Genes associated with rs548407620[chr6:35636235], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More