EnhancerDB
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  3. rs548516967[chr5:90596460]
Enhancers that have rs548516967[chr5:90596460]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 90595425 90613326 enh22427
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs548516967[chr5:90596460]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 90596454 90596475 IRF1 JASPAR yes 64189779
chr5 90596457 90596461 YY1 TRANSFAC yes 64189780
chr5 90596458 90596473 FOXP1 JASPAR yes 64189781
chr5 90596459 90596474 FOXP1 JASPAR yes 64189782
chr5 90596460 90596475 FOXP1 JASPAR yes 64189783
Genes associated with rs548516967[chr5:90596460], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More