EnhancerDB
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  3. rs548523317[chr1:55032955]
Enhancers that have rs548523317[chr1:55032955]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs548523317[chr1:55032955]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55032944 55032965 IRF1 JASPAR yes 28993292
chr1 55032945 55032966 IRF1 JASPAR yes 28993293
chr1 55032948 55032962 SPIC JASPAR yes 28993294
chr1 55032949 55032970 IRF1 JASPAR yes 28993295
chr1 55032951 55032956 ETS2 TRANSFAC yes 28993296
chr1 55032953 55032968 FOXP1 JASPAR yes 28993297
chr1 55032954 55032969 FOXP1 JASPAR yes 28993298
chr1 55032955 55032970 FOXP1 JASPAR yes 28993299
Genes associated with rs548523317[chr1:55032955], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More