EnhancerDB
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  3. rs548550904[chr1:172507119]
Enhancers that have rs548550904[chr1:172507119]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172503525 172518495 enh728
Prostate (PC-3) Blood (OCI-LY7) Blood (GM12878) Muscle (A673) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Neural Stem Cells (H9) Stomach
Transcript factors that have rs548550904[chr1:172507119]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172501367 172507799 ZNF274 GTRD no Bone Marrow (K562) 107845854
chr1 172506877 172507333 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21350104
chr1 172506877 172507333 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107845855
chr1 172506994 172507271 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21350105
chr1 172506994 172507271 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107845856
chr1 172507010 172507256 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21350106
chr1 172507010 172507256 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107845857
chr1 172507078 172507398 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21350107
chr1 172507078 172507398 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107845858
chr1 172507096 172507312 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21350108
chr1 172507096 172507312 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107845859
chr1 172507111 172507125 RORA JASPAR yes 33135631
chr1 172507111 172507125 RORA JASPAR yes 118399169
Genes associated with rs548550904[chr1:172507119], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More