EnhancerDB
  1. Home
  2. SNP
  3. rs548606982[chr3:12233506]
Enhancers that have rs548606982[chr3:12233506]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 12232819 12243015 enh20332
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Placenta Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Uterus Epithelial (MCF-7)
Transcript factors that have rs548606982[chr3:12233506]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 12233494 12233509 NFYB JASPAR yes 462603
chr3 12233497 12233515 NFYA JASPAR yes 462604
chr3 12233499 12233510 CDX2 JASPAR yes 462605
chr3 12233500 12233511 HOXA10 JASPAR yes 462606
chr3 12233501 12233510 CDX1 JASPAR yes 462610
chr3 12233501 12233511 HOXA13 JASPAR yes 462611
chr3 12233501 12233511 HOXB13 JASPAR yes 462612
chr3 12233501 12233511 HOXD13 JASPAR yes 462613
chr3 12233505 12233511 TBP TRANSFAC yes 462614
chr3 12233506 12233520 ONECUT2 JASPAR yes 462615
chr3 12233506 12233520 ONECUT3 JASPAR yes 462616
Genes associated with rs548606982[chr3:12233506], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More