EnhancerDB
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  3. rs548778549[chr17:41539029]
Enhancers that have rs548778549[chr17:41539029]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 41518125 41539515 enh17169
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Kidney Prostate (RWPE1) Cervix (HeLa-S3) Esophagus Astrocyte Lung (A549) Stomach Placenta Thyroid Adrenal Lung (PC-9) Pancreas Spleen Muscle (Myotube) Uterus Heart
Transcript factors that have rs548778549[chr17:41539029]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 41535672 41539765 ZNF143 GTRD no Epithelial (MCF-7) 21760772
chr17 41537696 41539148 P63 GTRD no Skin (Keratinocyte) 21760833
chr17 41538511 41539842 ZNF143 GTRD no Epithelial (MCF-7) 21760845
chr17 41538716 41539873 ZNF143 GTRD no Epithelial (MCF-7) 21760849
chr17 41538916 41539611 ZNF143 GTRD no Epithelial (MCF-7) 21760850
chr17 41538947 41539941 ZNF143 GTRD no Epithelial (MCF-7) 21760851
chr17 41538950 41539734 ZNF143 GTRD no Epithelial (MCF-7) 21760852
chr17 41538951 41539627 ZNF143 GTRD no Epithelial (MCF-7) 21760853
chr17 41538992 41539356 ZNF143 GTRD no Epithelial (MCF-7) 21760854
chr17 41538992 41539868 AR GTRD no Prostate (PC-3) 21760855
chr17 41538992 41539868 AR GTRD no Prostate (PC-3) 21760856
chr17 41539014 41539029 IRF9 JASPAR yes 54350142
Genes associated with rs548778549[chr17:41539029], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More