EnhancerDB
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  3. rs548957425[chr17:62690840]
Enhancers that have rs548957425[chr17:62690840]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62688405 62713087 enh17300
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs548957425[chr17:62690840]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62687737 62691399 ZNF143 GTRD no Epithelial (MCF-7) 21778957
chr17 62687749 62691357 TCF7L2 GTRD no Colon (HCT116) 21778958
chr17 62687783 62691374 ZNF143 GTRD no Epithelial (MCF-7) 21778959
chr17 62687797 62691593 ZNF143 GTRD no Epithelial (MCF-7) 21778960
chr17 62687810 62695569 ZNF143 GTRD no Epithelial (MCF-7) 21778961
chr17 62687873 62694535 ZNF143 GTRD no Epithelial (MCF-7) 21778963
chr17 62687878 62695454 ZNF143 GTRD no Epithelial (MCF-7) 21778964
chr17 62687993 62695445 ZNF143 GTRD no Epithelial (MCF-7) 21778965
chr17 62688394 62691502 TCF7L2 GTRD no Colon (HCT116) 21778973
chr17 62688476 62690874 TCF7L2 GTRD no Colon (HCT116) 21778975
chr17 62689369 62691317 TCF7L2 GTRD no Colon (HCT116) 21778980
chr17 62689440 62691294 TCF7L2 GTRD no Colon (HCT116) 21778982
chr17 62689456 62691341 ZNF143 GTRD no Epithelial (MCF-7) 21778983
chr17 62689644 62691644 ZNF143 GTRD no Epithelial (MCF-7) 21778987
chr17 62689960 62695593 ZNF143 GTRD no Epithelial (MCF-7) 21778989
chr17 62690264 62690914 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21779008
chr17 62690390 62691000 ZNF274 GTRD no Bone Marrow (K562) 21779027
chr17 62690410 62690886 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21779032
chr17 62690710 62691125 ZNF274 GTRD no Cervix (HeLa-S3) 21779041
chr17 62690753 62691350 MYOD GTRD no Muscle (Myoblast) 21779042
chr17 62690795 62691555 ZNF143 GTRD no Epithelial (MCF-7) 21779043
chr17 62690808 62691518 ZNF274 GTRD no Bone Marrow (K562) 21779044
Genes associated with rs548957425[chr17:62690840], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More