EnhancerDB
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  3. rs549241504[chr1:223912520]
Enhancers that have rs549241504[chr1:223912520]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 223886085 223931782 enh12712
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs549241504[chr1:223912520]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 223912519 223912529 HOXB13 JASPAR yes 35672937
chr1 223912519 223912529 HOXD13 JASPAR yes 35672938
chr1 223912519 223912530 HOXA10 JASPAR yes 35672939
chr1 223912520 223912530 ALX3 JASPAR yes 35672940
chr1 223912520 223912530 EMX1 JASPAR yes 35672941
chr1 223912520 223912530 EMX2 JASPAR yes 35672942
chr1 223912520 223912530 ESX1 JASPAR yes 35672943
chr1 223912520 223912530 GBX2 JASPAR yes 35672944
chr1 223912520 223912530 GSX1 JASPAR yes 35672945
chr1 223912520 223912530 GSX2 JASPAR yes 35672946
chr1 223912520 223912530 HESX1 JASPAR yes 35672947
chr1 223912520 223912530 HOXB2 JASPAR yes 35672948
chr1 223912520 223912530 HOXB3 JASPAR yes 35672949
chr1 223912520 223912530 LBX2 JASPAR yes 35672950
chr1 223912520 223912530 LHX2 JASPAR yes 35672951
chr1 223912520 223912530 LHX6 JASPAR yes 35672952
chr1 223912520 223912530 MEOX1 JASPAR yes 35672953
chr1 223912520 223912530 MEOX2 JASPAR yes 35672954
chr1 223912520 223912530 MIXL1 JASPAR yes 35672955
chr1 223912520 223912530 MNX1 JASPAR yes 35672956
chr1 223912520 223912530 NOTO JASPAR yes 35672957
chr1 223912520 223912530 RAX JASPAR yes 35672958
Genes associated with rs549241504[chr1:223912520], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More