EnhancerDB
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  3. rs549416628[chr2:25839800]
Enhancers that have rs549416628[chr2:25839800]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 25836360 25845235 enh33144
Skin (Keratinocyte) Prostate (PC-3) Kidney Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Ovary Lung (PC-9) Bone (Osteoblast) Stomach Pancreas (Panc1) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs549416628[chr2:25839800]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 25839797 25839812 FOXP1 JASPAR yes 72490898
chr2 25839798 25839813 FOXP1 JASPAR yes 72490899
chr2 25839799 25839814 FOXP1 JASPAR yes 72490900
chr2 25839799 25839820 IRF1 JASPAR yes 72490901
chr2 25839800 25839815 FOXP1 JASPAR yes 72490902
chr2 25839800 25839821 IRF1 JASPAR yes 72490903
Genes associated with rs549416628[chr2:25839800], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More