EnhancerDB
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  3. rs549435601[chr16:85620006]
Enhancers that have rs549435601[chr16:85620006]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85541745 85623813 enh16872
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs549435601[chr16:85620006]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85606928 85621806 ZNF274 GTRD no Bone Marrow (K562) 21729676
chr16 85606928 85621806 ZNF274 GTRD no Bone Marrow (K562) 107686975
chr16 85606928 85621806 ZNF274 GTRD no Bone Marrow (K562) 108216607
chr16 85606928 85621806 ZNF274 GTRD no Bone Marrow (K562) 108216608
chr16 85612643 85620132 ZNF143 GTRD no Epithelial (MCF-7) 21730170
chr16 85612643 85620132 ZNF143 GTRD no Epithelial (MCF-7) 107686976
chr16 85612643 85620132 ZNF143 GTRD no Epithelial (MCF-7) 108216665
chr16 85614105 85620091 ZNF143 GTRD no Epithelial (MCF-7) 21730299
chr16 85614105 85620091 ZNF143 GTRD no Epithelial (MCF-7) 108216669
chr16 85618291 85620832 ZNF274 GTRD no Bone Marrow (K562) 21730558
chr16 85618291 85620832 ZNF274 GTRD no Bone Marrow (K562) 107686977
chr16 85618612 85620101 ZNF143 GTRD no Epithelial (MCF-7) 21730563
chr16 85618612 85620101 ZNF143 GTRD no Epithelial (MCF-7) 107686978
chr16 85618848 85620015 TCF7L2 GTRD no Colon (HCT116) 21730564
chr16 85618880 85620334 TCF7L2 GTRD no Colon (HCT116) 21730565
chr16 85618880 85620334 TCF7L2 GTRD no Colon (HCT116) 107686979
chr16 85619174 85621028 TCF7L2 GTRD no Colon (HCT116) 21730568
chr16 85619174 85621028 TCF7L2 GTRD no Colon (HCT116) 107686980
chr16 85619240 85620956 ZNF274 GTRD no Bone Marrow (K562) 21730570
chr16 85619240 85620956 ZNF274 GTRD no Bone Marrow (K562) 107686981
chr16 85619395 85620993 ZNF274 GTRD no Bone Marrow (K562) 21730574
chr16 85619395 85620993 ZNF274 GTRD no Bone Marrow (K562) 107686982
chr16 85619449 85621429 ZNF274 GTRD no Bone Marrow (K562) 21730576
chr16 85619449 85621429 ZNF274 GTRD no Bone Marrow (K562) 107686983
chr16 85619518 85620022 ZNF274 GTRD no Bone Marrow (K562) 21730577
chr16 85619726 85620246 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21730578
chr16 85619726 85620246 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107686984
chr16 85619826 85620888 ZNF274 GTRD no Bone Marrow (K562) 21730579
chr16 85619826 85620888 ZNF274 GTRD no Bone Marrow (K562) 107686985
chr16 85619853 85620335 ZNF274 GTRD no Bone Marrow (K562) 21730580
chr16 85619853 85620335 ZNF274 GTRD no Bone Marrow (K562) 107686986
chr16 85619887 85621655 ZNF274 GTRD no Bone Marrow (K562) 21730581
chr16 85619887 85621655 ZNF274 GTRD no Bone Marrow (K562) 107686987
chr16 85619995 85620007 TFAP2A JASPAR yes 12080339
chr16 85620002 85620015 NFKB1 JASPAR yes 12080341
chr16 85620002 85620015 NFKB2 JASPAR yes 12080342
chr16 85620003 85620014 NFKB1 JASPAR yes 12080343
chr16 85620004 85620014 NFKB1 JASPAR yes 12080344
Genes associated with rs549435601[chr16:85620006], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More