EnhancerDB
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  3. rs549478396[chr18:55434163]
Enhancers that have rs549478396[chr18:55434163]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 55430385 55468195 enh17731
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs549478396[chr18:55434163]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 55434156 55434165 SNAI2 JASPAR yes 110882857
chr18 55434156 55434166 ID4 JASPAR yes 110882858
chr18 55434156 55434166 TCF3 JASPAR yes 110882859
chr18 55434156 55434166 TCF4 JASPAR yes 110882860
chr18 55434160 55434177 RARA JASPAR yes 110882861
chr18 55434160 55434177 RXRA JASPAR yes 110882862
chr18 55434161 55434175 TCF7L2 JASPAR yes 110882863
Genes associated with rs549478396[chr18:55434163], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More