EnhancerDB
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  3. rs549506001[chr5:90602032]
Enhancers that have rs549506001[chr5:90602032]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 90595425 90613326 enh22427
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs549506001[chr5:90602032]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 90602022 90602043 IRF1 JASPAR yes 64190641
chr5 90602023 90602038 FOXP1 JASPAR yes 64190642
chr5 90602023 90602044 IRF1 JASPAR yes 64190643
chr5 90602024 90602035 FOXP2 JASPAR yes 64190644
chr5 90602024 90602036 FOXC2 JASPAR yes 64190645
chr5 90602024 90602039 STAT2 JASPAR yes 64190646
chr5 90602025 90602040 FOXP1 JASPAR yes 64190647
chr5 90602028 90602043 FOXP1 JASPAR yes 64190648
chr5 90602029 90602044 FOXP1 JASPAR yes 64190649
chr5 90602030 90602045 FOXP1 JASPAR yes 64190650
Genes associated with rs549506001[chr5:90602032], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More