EnhancerDB
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  3. rs549548578[chr1:19254318]
Enhancers that have rs549548578[chr1:19254318]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs549548578[chr1:19254318]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19254302 19254322 ESR1 JASPAR yes 27162023
chr1 19254306 19254324 ESR2 JASPAR yes 27162025
chr1 19254307 19254322 ESR2 JASPAR yes 27162026
chr1 19254316 19254330 GLIS2 JASPAR yes 27162027
chr1 19254318 19254332 PLAG1 JASPAR yes 27162028
Genes associated with rs549548578[chr1:19254318], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More