EnhancerDB
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Enhancers that have rs549620457[chr17:39064789]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39055145 39077753 enh17145
Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs549620457[chr17:39064789]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39064772 39064793 IRF1 JASPAR yes 54243092
chr17 39064775 39064790 FOXP1 JASPAR yes 54243095
chr17 39064777 39064797 RREB1 JASPAR yes 54243096
chr17 39064777 39064798 IRF1 JASPAR yes 54243097
chr17 39064779 39064794 FOXP1 JASPAR yes 54243098
chr17 39064784 39064790 TCF4 TRANSFAC yes 54243099
chr17 39064784 39064799 FOXP1 JASPAR yes 54243100
chr17 39064785 39064796 FOXP2 JASPAR yes 54243101
chr17 39064785 39064797 FOXC2 JASPAR yes 54243102
chr17 39064787 39064802 MEF2C JASPAR yes 54243103
Genes associated with rs549620457[chr17:39064789], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More