EnhancerDB
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  3. rs549667001[chr6:107996038]
Enhancers that have rs549667001[chr6:107996038]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 107984585 108002855 enh9300
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Blood (T-cell) Astrocyte Bone (Osteoblast) Colon (HCT116) Uterus Blood (Karpas-422) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Thymus Stomach
Transcript factors that have rs549667001[chr6:107996038]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 107996030 107996040 ALX3 JASPAR yes 104129144
chr6 107996030 107996040 GSX2 JASPAR yes 104129145
chr6 107996030 107996040 MIXL1 JASPAR yes 104129146
chr6 107996030 107996040 MNX1 JASPAR yes 104129147
chr6 107996031 107996039 ISX JASPAR yes 104129148
chr6 107996031 107996039 LMX1A JASPAR yes 104129149
chr6 107996031 107996039 LMX1B JASPAR yes 104129150
chr6 107996031 107996039 NKX6-1 JASPAR yes 104129151
chr6 107996031 107996039 NKX6-2 JASPAR yes 104129152
chr6 107996031 107996039 PRRX1 JASPAR yes 104129153
chr6 107996031 107996039 RAX2 JASPAR yes 104129154
chr6 107996031 107996039 SHOX JASPAR yes 104129155
chr6 107996031 107996039 UNCX JASPAR yes 104129156
chr6 107996031 107996039 VAX1 JASPAR yes 104129157
chr6 107996032 107996053 IRF1 JASPAR yes 104129158
chr6 107996036 107996042 TBP TRANSFAC yes 104129159
Genes associated with rs549667001[chr6:107996038], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More