EnhancerDB
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  3. rs549730177[chr11:13239398]
Enhancers that have rs549730177[chr11:13239398]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr11 13226465 13248095 enh28610
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Colon (HCT116) Uterus Lung (PC-9) Neural Stem Cells (H9) Thymus
Transcript factors that have rs549730177[chr11:13239398]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr11 13238489 13239683 ZNF274 GTRD no Cervix (HeLa-S3) 21472894
chr11 13238723 13239526 ZNF274 GTRD no Cervix (HeLa-S3) 21472895
chr11 13238854 13239458 ZNF274 GTRD no Cervix (HeLa-S3) 21472897
chr11 13239387 13239402 FOXP1 JASPAR yes 37514267
chr11 13239392 13239402 HOXA13 JASPAR yes 37514268
chr11 13239392 13239402 HOXB13 JASPAR yes 37514269
chr11 13239392 13239402 HOXD13 JASPAR yes 37514270
chr11 13239392 13239403 HOXA10 JASPAR yes 37514271
chr11 13239393 13239402 CDX1 JASPAR yes 37514272
chr11 13239393 13239404 CDX2 JASPAR yes 37514273
chr11 13239398 13239404 NFIC JASPAR yes 37514274
Genes associated with rs549730177[chr11:13239398], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More