EnhancerDB
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  3. rs549869434[chr1:16489023]
Enhancers that have rs549869434[chr1:16489023]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16486025 16524255 enh11545
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 16489021 16489207 vista522
VISTA
Transcript factors that have rs549869434[chr1:16489023]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16488711 16489231 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107802223
chr1 16489008 16489028 RREB1 JASPAR yes 27029432
chr1 16489008 16489028 RREB1 JASPAR yes 118238718
chr1 16489011 16489026 LEF1 JASPAR yes 27029433
chr1 16489011 16489026 LEF1 JASPAR yes 118238719
chr1 16489012 16489026 TCF7L2 JASPAR yes 27029434
chr1 16489012 16489026 TCF7L2 JASPAR yes 118238720
Genes associated with rs549869434[chr1:16489023], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More