EnhancerDB
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  3. rs549970860[chr1:28746521]
Enhancers that have rs549970860[chr1:28746521]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 28732865 28757735 enh186
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Blood (GM12878) Stomach Muscle (A673) Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs549970860[chr1:28746521]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 28746511 28746521 TBX21 JASPAR yes 27768978
chr1 28746512 28746521 ZEB1 JASPAR yes 27768984
chr1 28746512 28746524 PKNOX1 JASPAR yes 27768985
chr1 28746512 28746524 TGIF1 JASPAR yes 27768986
chr1 28746512 28746525 ZBTB18 JASPAR yes 27768987
chr1 28746513 28746523 FIGLA JASPAR yes 27768988
chr1 28746513 28746523 ID4 JASPAR yes 27768989
chr1 28746513 28746523 TCF3 JASPAR yes 27768990
chr1 28746513 28746523 TCF4 JASPAR yes 27768991
chr1 28746514 28746523 SNAI2 JASPAR yes 27768992
Genes associated with rs549970860[chr1:28746521], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More