EnhancerDB
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  3. rs550089353[chr19:13962790]
Enhancers that have rs550089353[chr19:13962790]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13941465 13967615 enh5016
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs550089353[chr19:13962790]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13961555 13963254 TCF7L2 GTRD no Colon (HCT116) 21852649
chr19 13961783 13964126 TCF7L2 GTRD no Colon (HCT116) 21852661
chr19 13961785 13963314 TCF7L2 GTRD no Colon (HCT116) 21852662
chr19 13961805 13964332 TCF7L2 GTRD no Colon (HCT116) 21852665
chr19 13961822 13964144 TCF7L2 GTRD no Colon (HCT116) 21852666
chr19 13961916 13963237 TCF7L2 GTRD no Colon (HCT116) 21852677
chr19 13962152 13963540 ZNF274 GTRD no Bone Marrow (K562) 21852723
chr19 13962301 13963257 TCF7L2 GTRD no Colon (HCT116) 21852726
chr19 13962322 13963374 TCF7L2 GTRD no Colon (HCT116) 21852727
chr19 13962496 13963052 ZNF274 GTRD no Bone Marrow (K562) 21852729
chr19 13962599 13964143 TCF7L2 GTRD no Colon (HCT116) 21852730
chr19 13962674 13963833 ZNF274 GTRD no Blood (GM12878) 21852731
chr19 13962775 13962790 FOXA1 JASPAR yes 112538583
chr19 13962777 13962791 ONECUT3 JASPAR yes 112538586
chr19 13962779 13962794 FOXA1 JASPAR yes 112538590
chr19 13962780 13962795 FOXP1 JASPAR yes 112538591
chr19 13962781 13962792 FOXP2 JASPAR yes 112538592
chr19 13962781 13962793 FOXC2 JASPAR yes 112538593
chr19 13962781 13962795 FOXF2 JASPAR yes 112538594
chr19 13962782 13962793 FOXB1 JASPAR yes 112538595
chr19 13962782 13962793 FOXC1 JASPAR yes 112538596
chr19 13962783 13962794 FOXA1 JASPAR yes 112538598
chr19 13962783 13962797 SPIC JASPAR yes 112538599
chr19 13962784 13962805 IRF1 JASPAR yes 112538600
chr19 13962786 13962801 PRDM1 JASPAR yes 112538601
chr19 13962786 13962801 STAT2 JASPAR yes 112538602
Genes associated with rs550089353[chr19:13962790], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More