EnhancerDB
  1. Home
  2. SNP
  3. rs550213465[chr1:28736842]
Enhancers that have rs550213465[chr1:28736842]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 28732865 28757735 enh186
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Blood (GM12878) Stomach Muscle (A673) Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs550213465[chr1:28736842]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 28736838 28736848 HOXA13 JASPAR yes 27767242
chr1 28736838 28736848 HOXB13 JASPAR yes 27767243
chr1 28736838 28736848 HOXD13 JASPAR yes 27767244
chr1 28736838 28736849 HOXA10 JASPAR yes 27767245
chr1 28736839 28736848 CDX1 JASPAR yes 27767246
chr1 28736839 28736850 CDX2 JASPAR yes 27767247
Genes associated with rs550213465[chr1:28736842], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More