EnhancerDB
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  3. rs550316509[chr2:38941936]
Enhancers that have rs550316509[chr2:38941936]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 38916069 38955355 enh5435
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs550316509[chr2:38941936]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 38941925 38941940 FOXA1 JASPAR yes 73168912
chr2 38941927 38941939 FOXC2 JASPAR yes 73168913
chr2 38941928 38941939 FOXC1 JASPAR yes 73168914
chr2 38941929 38941940 FOXA1 JASPAR yes 73168915
Genes associated with rs550316509[chr2:38941936], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More