EnhancerDB
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  3. rs550328501[chr1:201426665]
Enhancers that have rs550328501[chr1:201426665]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs550328501[chr1:201426665]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201426159 201426831 ZNF143 GTRD no Epithelial (MCF-7) 21364073
chr1 201426159 201426831 ZNF143 GTRD no Epithelial (MCF-7) 107856203
chr1 201426180 201426799 TCF7L2 GTRD no Colon (HCT116) 21364074
chr1 201426180 201426799 TCF7L2 GTRD no Colon (HCT116) 107856204
chr1 201426213 201426815 TCF7L2 GTRD no Colon (HCT116) 21364075
chr1 201426213 201426815 TCF7L2 GTRD no Colon (HCT116) 107856205
chr1 201426259 201426692 SOX2 GTRD no Neural Stem Cells (H9) 107856206
chr1 201426337 201426677 ZNF274 GTRD no Blood (GM12878) 107856208
chr1 201426572 201427168 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21364076
chr1 201426649 201426665 POU4F2 JASPAR yes 34495704
chr1 201426649 201426665 POU4F3 JASPAR yes 34495705
chr1 201426656 201426666 EMX1 JASPAR yes 34495707
chr1 201426656 201426666 EMX2 JASPAR yes 34495708
chr1 201426656 201426666 EN2 JASPAR yes 34495709
chr1 201426656 201426666 EVX1 JASPAR yes 34495710
chr1 201426656 201426666 EVX2 JASPAR yes 34495711
chr1 201426656 201426666 GBX1 JASPAR yes 34495712
chr1 201426656 201426666 GSX1 JASPAR yes 34495713
chr1 201426656 201426666 GSX2 JASPAR yes 34495714
chr1 201426656 201426666 HOXA2 JASPAR yes 34495715
chr1 201426656 201426666 HOXB2 JASPAR yes 34495716
chr1 201426656 201426666 HOXB3 JASPAR yes 34495717
chr1 201426656 201426666 MEOX1 JASPAR yes 34495718
chr1 201426656 201426666 MEOX2 JASPAR yes 34495719
chr1 201426656 201426666 MIXL1 JASPAR yes 34495720
chr1 201426657 201426665 LMX1A JASPAR yes 34495721
chr1 201426657 201426665 LMX1B JASPAR yes 34495722
chr1 201426657 201426665 NKX6-1 JASPAR yes 34495723
chr1 201426657 201426665 NKX6-2 JASPAR yes 34495724
chr1 201426657 201426665 PDX1 JASPAR yes 34495725
chr1 201426657 201426665 VAX1 JASPAR yes 34495726
chr1 201426657 201426665 VAX2 JASPAR yes 34495727
chr1 201426657 201426665 VSX1 JASPAR yes 34495728
chr1 201426661 201426669 GMEB2 JASPAR yes 34495729
Genes associated with rs550328501[chr1:201426665], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More