EnhancerDB
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  3. rs550364477[chr1:225951162]
Enhancers that have rs550364477[chr1:225951162]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs550364477[chr1:225951162]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225950707 225951364 SOX2 GTRD no Neural Stem Cells (H9) 21385812
chr1 225950718 225951325 SOX2 GTRD no Neural Stem Cells (H9) 21385813
chr1 225950951 225951428 SOX2 GTRD no Neural Stem Cells (H9) 21385814
chr1 225950998 225951455 SOX2 GTRD no Neural Stem Cells (H9) 21385815
chr1 225951009 225951430 SOX2 GTRD no Neural Stem Cells (H9) 21385816
chr1 225951028 225951381 ZNF274 GTRD no Liver (HepG2) 21385817
chr1 225951063 225951346 ZNF274 GTRD no Liver (HepG2) 21385818
chr1 225951065 225951381 ZNF274 GTRD no Liver (HepG2) 21385819
chr1 225951121 225951362 SOX2 GTRD no Neural Stem Cells (H9) 21385820
Genes associated with rs550364477[chr1:225951162], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More