EnhancerDB
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  3. rs550390871[chr1:209577162]
Enhancers that have rs550390871[chr1:209577162]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs550390871[chr1:209577162]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209575662 209577515 ZNF274 GTRD no Cervix (HeLa-S3) 21375238
chr1 209575982 209577503 ZBTB33 GTRD no Lung (A549) 21375239
chr1 209576072 209577427 ZNF143 GTRD no Epithelial (MCF-7) 21375240
chr1 209576082 209577641 ZNF274 GTRD no Bone Marrow (K562) 107865734
chr1 209576115 209577538 ZBTB33 GTRD no Lung (A549) 21375241
chr1 209576121 209577481 ZNF143 GTRD no Epithelial (MCF-7) 21375242
chr1 209576283 209577393 ZNF274 GTRD no Cervix (HeLa-S3) 21375243
chr1 209576293 209577351 ZBTB33 GTRD no Lung (A549) 21375244
chr1 209576332 209577370 ZBTB33 GTRD no Lung (A549) 21375245
chr1 209576365 209577287 ZNF143 GTRD no Epithelial (MCF-7) 21375247
chr1 209576367 209577172 ZNF274 GTRD no Cervix (HeLa-S3) 21375248
chr1 209576481 209577194 ZBTB33 GTRD no Lung (A549) 21375254
chr1 209576555 209577236 ZNF143 GTRD no Epithelial (MCF-7) 21375257
chr1 209576581 209577171 ZNF143 GTRD no Epithelial (MCF-7) 21375260
chr1 209576597 209577301 ZNF274 GTRD no Cervix (HeLa-S3) 21375261
chr1 209576645 209577213 CTCF GTRD no Spleen 21375262
chr1 209576659 209577229 ZNF143 GTRD no Epithelial (MCF-7) 21375265
chr1 209576776 209577166 ZBTB33 GTRD no Lung (A549) 21375274
chr1 209576788 209577232 TCF7L2 GTRD no Colon (HCT116) 21375275
chr1 209576801 209577321 ZNF143 GTRD no Epithelial (MCF-7) 21375277
chr1 209577159 209577164 ETS2 TRANSFAC yes 34972015
Genes associated with rs550390871[chr1:209577162], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More