EnhancerDB
  1. Home
  2. SNP
  3. rs550422500[chr1:178634456]
Enhancers that have rs550422500[chr1:178634456]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 178606845 178636895 enh759
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Large Intestine Ovary Esophagus Astrocyte Blood (OCI-LY7) Stomach Placenta Blood (Karpas-422) Lung (PC-9) Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs550422500[chr1:178634456]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 178634445 178634456 YY2 JASPAR yes 33435787
chr1 178634453 178634463 FIGLA JASPAR yes 33435789
chr1 178634453 178634463 ID4 JASPAR yes 33435790
chr1 178634453 178634463 TCF3 JASPAR yes 33435791
chr1 178634453 178634463 TCF4 JASPAR yes 33435792
chr1 178634454 178634463 SNAI2 JASPAR yes 33435793
chr1 178634455 178634460 USF2 TRANSFAC yes 33435794
Genes associated with rs550422500[chr1:178634456], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More