EnhancerDB
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  3. rs550715009[chr19:10860549]
Enhancers that have rs550715009[chr19:10860549]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 10832365 10873258 enh5002
Bone Marrow (K562) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs550715009[chr19:10860549]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 10860538 10860550 PKNOX2 JASPAR yes 112435792
chr19 10860539 10860549 ID4 JASPAR yes 112435793
chr19 10860539 10860549 NHLH1 JASPAR yes 112435794
chr19 10860539 10860549 TCF3 JASPAR yes 112435795
chr19 10860539 10860549 TCF4 JASPAR yes 112435796
chr19 10860540 10860549 SNAI2 JASPAR yes 112435797
Genes associated with rs550715009[chr19:10860549], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More