EnhancerDB
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  3. rs550720316[chr6:138246160]
Enhancers that have rs550720316[chr6:138246160]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 138243425 138257435 enh23665
Skin (Keratinocyte) Prostate (PC-3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Placenta Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myotube) Neural Stem Cells (H9) Thymus Stomach
Transcript factors that have rs550720316[chr6:138246160]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 138246151 138246167 RFX2 JASPAR yes 105692281
chr6 138246151 138246167 RFX3 JASPAR yes 105692282
chr6 138246151 138246167 RFX4 JASPAR yes 105692283
chr6 138246151 138246167 RFX5 JASPAR yes 105692284
chr6 138246160 138246170 HMBOX1 JASPAR yes 105692286
Genes associated with rs550720316[chr6:138246160], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More