EnhancerDB
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  3. rs550728488[chr15:69090158]
Enhancers that have rs550728488[chr15:69090158]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr15 69072185 69092337 enh16270
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Large Intestine Esophagus Blood (GM12878) Placenta Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr15 69090153 69090340 vista20486
VISTA
Transcript factors that have rs550728488[chr15:69090158]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr15 69086221 69090732 ZNF274 GTRD no Cervix (HeLa-S3) 108151356
chr15 69086221 69090732 ZNF274 GTRD no Cervix (HeLa-S3) 108151357
chr15 69090054 69090435 ZNF143 GTRD no Epithelial (MCF-7) 108151389
chr15 69090095 69090615 SOX2 GTRD no Neural Stem Cells (H9) 21663849
chr15 69090095 69090615 SOX2 GTRD no Neural Stem Cells (H9) 108151390
chr15 69090110 69090632 SOX2 GTRD no Neural Stem Cells (H9) 21663850
chr15 69090110 69090632 SOX2 GTRD no Neural Stem Cells (H9) 108151391
chr15 69090144 69090165 ZNF263 JASPAR yes 24315733
chr15 69090144 69090165 ZNF263 JASPAR yes 70549410
chr15 69090148 69090534 SOX2 GTRD no Neural Stem Cells (H9) 21663851
chr15 69090148 69090534 SOX2 GTRD no Neural Stem Cells (H9) 108151392
chr15 69090152 69090158 GATA3 JASPAR yes 24315737
chr15 69090152 69090158 GATA3 JASPAR yes 70549414
chr15 69090155 69090167 E2F8 JASPAR yes 24315738
chr15 69090155 69090167 E2F8 JASPAR yes 70549415
Genes associated with rs550728488[chr15:69090158], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More