EnhancerDB
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  3. rs550888282[chr19:11048942]
Enhancers that have rs550888282[chr19:11048942]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 11044165 11061272 enh17918
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Pancreas Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs550888282[chr19:11048942]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 11048811 11049263 ZNF143 GTRD no Epithelial (MCF-7) 21849205
chr19 11048823 11049373 ZNF143 GTRD no Epithelial (MCF-7) 21849206
chr19 11048863 11049442 ZNF274 GTRD no Bone Marrow (K562) 21849207
chr19 11048866 11049927 TCF7L2 GTRD no Colon (HCT116) 21849208
chr19 11048937 11048943 NFE2 TRANSFAC yes 112446354
chr19 11048940 11048954 PLAG1 JASPAR yes 112446355
chr19 11048941 11048955 PLAG1 JASPAR yes 112446356
Genes associated with rs550888282[chr19:11048942], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More