EnhancerDB
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  3. rs550896821[chr1:229265940]
Enhancers that have rs550896821[chr1:229265940]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229225622 229286295 enh12760
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Ovary Esophagus Liver Blood (T-cell) Blood (OCI-LY7) Stomach Placenta Thyroid Uterus Embryonic Stem Cell Line (H1-hESC) Pancreas Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs550896821[chr1:229265940]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229265700 229266316 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390215
chr1 229265716 229266106 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390216
chr1 229265750 229266294 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390217
chr1 229265765 229266055 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390218
chr1 229265778 229266038 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390219
chr1 229265843 229266159 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390220
chr1 229265844 229266180 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390221
chr1 229265871 229266141 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390222
chr1 229265873 229266273 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390223
chr1 229265880 229266270 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390224
chr1 229265929 229266265 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390225
chr1 229265930 229265951 ZNF263 JASPAR yes 35964562
chr1 229265933 229265954 ZNF263 JASPAR yes 35964564
chr1 229265934 229265955 IRF1 JASPAR yes 35964565
chr1 229265936 229265946 SP1 JASPAR yes 35964566
chr1 229265936 229265957 ZNF263 JASPAR yes 35964567
chr1 229265937 229265958 ZNF263 JASPAR yes 35964568
chr1 229265938 229265943 ETS2 TRANSFAC yes 35964569
chr1 229265938 229265953 PRDM1 JASPAR yes 35964570
chr1 229265938 229265953 STAT2 JASPAR yes 35964571
Genes associated with rs550896821[chr1:229265940], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More