EnhancerDB
  1. Home
  2. SNP
  3. rs550905[chr19:6088828]
Enhancers that have rs550905[chr19:6088828]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 6084063 6113078 enh17886
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs550905[chr19:6088828]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 6085947 6089124 ZBTB33 GTRD no Brain (SK-N-SH) 21844427
chr19 6085947 6089124 ZBTB33 GTRD no Brain (SK-N-SH) 108376892
chr19 6086509 6089323 ZNF274 GTRD no Blood (GM12878) 108376894
chr19 6086559 6089269 ZNF274 GTRD no Blood (GM12878) 108376896
chr19 6086608 6089118 ZNF274 GTRD no Blood (GM12878) 108376897
chr19 6086633 6089119 ZNF274 GTRD no Bone Marrow (K562) 21844429
chr19 6086633 6089119 ZNF274 GTRD no Bone Marrow (K562) 108376898
chr19 6086701 6089372 TCF7L2 GTRD no Colon (HCT116) 21844430
chr19 6086701 6089372 TCF7L2 GTRD no Colon (HCT116) 108376899
chr19 6086719 6089312 ZNF274 GTRD no Bone Marrow (K562) 21844431
chr19 6086719 6089312 ZNF274 GTRD no Bone Marrow (K562) 108376900
chr19 6086790 6089425 ZNF274 GTRD no Blood (GM12878) 108376902
chr19 6086822 6089144 ZNF274 GTRD no Blood (GM12878) 108376903
chr19 6086943 6089254 ZNF274 GTRD no Bone Marrow (K562) 21844434
chr19 6086943 6089254 ZNF274 GTRD no Bone Marrow (K562) 108376908
chr19 6087021 6089001 ZNF274 GTRD no Blood (GM12878) 108376910
chr19 6087473 6089018 ZNF274 GTRD no Blood (GM12878) 108376916
chr19 6087563 6089070 ZNF274 GTRD no Blood (GM12878) 108376921
chr19 6087571 6089221 ZBTB33 GTRD no Brain (SK-N-SH) 21844443
chr19 6087571 6089221 ZBTB33 GTRD no Brain (SK-N-SH) 108376922
chr19 6087604 6089204 ZBTB33 GTRD no Brain (SK-N-SH) 21844446
chr19 6087604 6089204 ZBTB33 GTRD no Brain (SK-N-SH) 108376927
chr19 6087636 6089168 ZBTB33 GTRD no Lung (A549) 21844448
chr19 6087636 6089168 ZBTB33 GTRD no Lung (A549) 108376930
chr19 6087643 6089217 ZBTB33 GTRD no Lung (A549) 21844449
chr19 6087643 6089217 ZBTB33 GTRD no Lung (A549) 108376933
chr19 6087648 6089100 ZNF274 GTRD no Bone Marrow (K562) 21844450
chr19 6087648 6089100 ZNF274 GTRD no Bone Marrow (K562) 108376934
chr19 6087652 6089059 ZBTB33 GTRD no Brain (SK-N-SH) 21844452
chr19 6087652 6089059 ZBTB33 GTRD no Brain (SK-N-SH) 108376936
chr19 6087665 6089017 ZBTB33 GTRD no Brain (SK-N-SH) 21844456
chr19 6087665 6089017 ZBTB33 GTRD no Brain (SK-N-SH) 108376944
chr19 6087676 6089210 ZNF274 GTRD no Bone Marrow (K562) 21844459
chr19 6087676 6089210 ZNF274 GTRD no Bone Marrow (K562) 108376949
chr19 6087682 6089245 ZBTB33 GTRD no Brain (SK-N-SH) 21844460
chr19 6087682 6089245 ZBTB33 GTRD no Brain (SK-N-SH) 108376950
chr19 6087690 6089208 ZNF274 GTRD no Cervix (HeLa-S3) 21844462
chr19 6087690 6089208 ZNF274 GTRD no Cervix (HeLa-S3) 108376952
chr19 6087754 6089110 ZNF143 GTRD no Epithelial (MCF-7) 21844476
chr19 6087754 6089110 ZNF143 GTRD no Epithelial (MCF-7) 108376973
chr19 6087755 6089148 ZBTB33 GTRD no Brain (SK-N-SH) 21844477
chr19 6087755 6089148 ZBTB33 GTRD no Brain (SK-N-SH) 108376974
chr19 6087784 6089195 ZBTB33 GTRD no Brain (SK-N-SH) 21844487
chr19 6087784 6089195 ZBTB33 GTRD no Brain (SK-N-SH) 108376991
chr19 6087827 6089299 ZNF143 GTRD no Epithelial (MCF-7) 21844504
chr19 6087827 6089299 ZNF143 GTRD no Epithelial (MCF-7) 108377011
chr19 6088240 6089147 ZNF274 GTRD no Bone Marrow (K562) 21844540
chr19 6088240 6089147 ZNF274 GTRD no Bone Marrow (K562) 108377066
chr19 6088821 6088835 FOXF2 JASPAR yes 112255585
chr19 6088823 6088834 FOXB1 JASPAR yes 112255586
chr19 6088823 6088834 FOXC1 JASPAR yes 112255587
chr19 6088823 6088835 FOXC2 JASPAR yes 112255588
chr19 6088826 6088840 POU4F1 JASPAR yes 112255589
Genes associated with rs550905[chr19:6088828], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More