EnhancerDB
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  3. rs551092560[chr19:13143962]
Enhancers that have rs551092560[chr19:13143962]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13138760 13157647 enh17929
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs551092560[chr19:13143962]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13142055 13144205 TCF7L2 GTRD no Colon (HCT116) 21850182
chr19 13142055 13144205 TCF7L2 GTRD no Colon (HCT116) 108387507
chr19 13143925 13144920 TCF7L2 GTRD no Colon (HCT116) 21850223
chr19 13143925 13144920 TCF7L2 GTRD no Colon (HCT116) 108387575
chr19 13143942 13144975 ZNF143 GTRD no Epithelial (MCF-7) 21850224
chr19 13143942 13144975 ZNF143 GTRD no Epithelial (MCF-7) 108387576
chr19 13143949 13143965 ZNF143 JASPAR yes 112502897
chr19 13143959 13143966 NFATC2 JASPAR yes 112502900
chr19 13143960 13143968 FOXO3 JASPAR yes 112502901
Genes associated with rs551092560[chr19:13143962], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More