EnhancerDB
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  3. rs551423988[chr12:52601138]
Enhancers that have rs551423988[chr12:52601138]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52591245 52620175 enh14727
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs551423988[chr12:52601138]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52600790 52601632 TCF7L2 GTRD no Colon (HCT116) 21546663
chr12 52600806 52601322 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546664
chr12 52600832 52601362 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546665
chr12 52600892 52601554 TCF7L2 GTRD no Colon (HCT116) 21546666
chr12 52600914 52601614 TCF7L2 GTRD no Colon (HCT116) 21546667
chr12 52601000 52601620 TCF7L2 GTRD no Colon (HCT116) 21546668
chr12 52601101 52601291 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546669
chr12 52601127 52601140 ELF1 JASPAR yes 120927953
chr12 52601127 52601142 STAT1 JASPAR yes 120927954
chr12 52601129 52601140 STAT1 JASPAR yes 120927955
Genes associated with rs551423988[chr12:52601138], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More