EnhancerDB
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  3. rs551425673[chr1:1616871]
Enhancers that have rs551425673[chr1:1616871]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 1607365 1622353 enh2
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs551425673[chr1:1616871]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 1616851 1616872 IRF1 JASPAR yes 26198930
chr1 1616852 1616873 IRF1 JASPAR yes 26198932
chr1 1616853 1616874 IRF1 JASPAR yes 26198934
chr1 1616854 1616875 IRF1 JASPAR yes 26198936
chr1 1616855 1616876 IRF1 JASPAR yes 26198938
chr1 1616856 1616871 FOXP1 JASPAR yes 26198939
chr1 1616856 1616877 IRF1 JASPAR yes 26198940
chr1 1616857 1616872 FOXP1 JASPAR yes 26198941
chr1 1616859 1616874 FOXP1 JASPAR yes 26198942
chr1 1616860 1616881 IRF1 JASPAR yes 26198943
chr1 1616861 1616876 FOXP1 JASPAR yes 26198944
chr1 1616861 1616882 IRF1 JASPAR yes 26198945
chr1 1616864 1616879 PRDM1 JASPAR yes 26198946
chr1 1616866 1616887 IRF1 JASPAR yes 26198947
chr1 1616867 1616888 IRF1 JASPAR yes 26198948
chr1 1616869 1616883 IRF7 JASPAR yes 26198949
chr1 1616870 1616884 STAT1 JASPAR yes 26198950
Genes associated with rs551425673[chr1:1616871], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More