EnhancerDB
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  3. rs552000873[chr17:59402183]
Enhancers that have rs552000873[chr17:59402183]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 59383635 59420035 enh17269
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs552000873[chr17:59402183]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 59402177 59402192 FOXP1 JASPAR yes 55148594
chr17 59402180 59402195 FOXP1 JASPAR yes 55148595
chr17 59402181 59402196 FOXP1 JASPAR yes 55148596
chr17 59402182 59402197 FOXP1 JASPAR yes 55148597
chr17 59402182 59402203 IRF1 JASPAR yes 55148598
chr17 59402183 59402198 FOXP1 JASPAR yes 55148599
chr17 59402183 59402204 IRF1 JASPAR yes 55148600
Genes associated with rs552000873[chr17:59402183], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More