EnhancerDB
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  3. rs552013740[chr1:16489990]
Enhancers that have rs552013740[chr1:16489990]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16486025 16524255 enh11545
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs552013740[chr1:16489990]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16489990 16490000 ID4 JASPAR yes 27029607
chr1 16489990 16490000 TCF3 JASPAR yes 27029608
chr1 16489990 16490000 TCF4 JASPAR yes 27029609
Genes associated with rs552013740[chr1:16489990], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More