EnhancerDB
  1. Home
  2. SNP
  3. rs552142255[chr1:201420875]
Enhancers that have rs552142255[chr1:201420875]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs552142255[chr1:201420875]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201420508 201421496 ZNF143 GTRD no Epithelial (MCF-7) 21364041
chr1 201420533 201421477 ZNF143 GTRD no Epithelial (MCF-7) 21364042
chr1 201420622 201421378 TCF7L2 GTRD no Colon (HCT116) 21364043
chr1 201420875 201420883 SP1 TRANSFAC yes 34494959
chr1 201420875 201420885 SP1 JASPAR yes 34494960
Genes associated with rs552142255[chr1:201420875], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More