EnhancerDB
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  3. rs552271128[chr1:225958630]
Enhancers that have rs552271128[chr1:225958630]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs552271128[chr1:225958630]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225957933 225958656 SOX2 GTRD no Neural Stem Cells (H9) 21385871
chr1 225957940 225958819 SOX2 GTRD no Neural Stem Cells (H9) 21385872
chr1 225957951 225958843 SOX2 GTRD no Neural Stem Cells (H9) 21385873
chr1 225957964 225958677 SOX2 GTRD no Neural Stem Cells (H9) 21385875
chr1 225958026 225958741 SOX2 GTRD no Neural Stem Cells (H9) 21385876
chr1 225958090 225958664 SOX2 GTRD no Neural Stem Cells (H9) 21385881
chr1 225958115 225958666 SOX2 GTRD no Neural Stem Cells (H9) 21385882
chr1 225958115 225958716 SOX2 GTRD no Neural Stem Cells (H9) 21385883
chr1 225958564 225958900 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385884
chr1 225958578 225958918 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385885
chr1 225958605 225958895 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385886
chr1 225958609 225958630 ZNF263 JASPAR yes 35770233
chr1 225958611 225958631 RREB1 JASPAR yes 35770234
chr1 225958612 225958633 ZNF263 JASPAR yes 35770236
chr1 225958627 225958631 LFA1 TRANSFAC yes 35770241
Genes associated with rs552271128[chr1:225958630], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More