EnhancerDB
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  3. rs552497589[chr1:19273105]
Enhancers that have rs552497589[chr1:19273105]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs552497589[chr1:19273105]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19271677 19273824 TCF7L2 GTRD no Colon (HCT116) 107802286
chr1 19273103 19273114 CEBPB JASPAR yes 27164770
chr1 19273103 19273115 HLF JASPAR yes 27164771
chr1 19273104 19273115 CEBPA JASPAR yes 27164772
Genes associated with rs552497589[chr1:19273105], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More