EnhancerDB
  1. Home
  2. SNP
  3. rs552583554[chr19:11052438]
Enhancers that have rs552583554[chr19:11052438]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 11044165 11061272 enh17918
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Pancreas Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs552583554[chr19:11052438]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 11051759 11053101 STAT3 GTRD no Blood (OCI-LY7) 21849233
chr19 11052199 11053165 ZNF143 GTRD no Epithelial (MCF-7) 21849234
chr19 11052241 11053245 TCF7L2 GTRD no Colon (HCT116) 21849235
chr19 11052243 11053092 ZNF143 GTRD no Epithelial (MCF-7) 21849236
chr19 11052280 11053038 ZNF143 GTRD no Epithelial (MCF-7) 21849237
chr19 11052293 11052809 ZNF143 GTRD no Epithelial (MCF-7) 21849238
chr19 11052334 11053005 TCF7L2 GTRD no Colon (HCT116) 21849239
chr19 11052433 11052454 IRF1 JASPAR yes 112446949
chr19 11052437 11052452 FOXP1 JASPAR yes 112446950
chr19 11052437 11052458 IRF1 JASPAR yes 112446951
chr19 11052438 11052453 FOXP1 JASPAR yes 112446952
chr19 11052438 11052459 IRF1 JASPAR yes 112446953
Genes associated with rs552583554[chr19:11052438], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More