EnhancerDB
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  3. rs552588368[chr5:90602616]
Enhancers that have rs552588368[chr5:90602616]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 90595425 90613326 enh22427
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs552588368[chr5:90602616]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 90602605 90602619 GATA2 JASPAR yes 64190725
chr5 90602610 90602631 IRF1 JASPAR yes 64190726
chr5 90602613 90602628 FOXP1 JASPAR yes 64190727
chr5 90602615 90602630 FOXP1 JASPAR yes 64190728
chr5 90602615 90602636 IRF1 JASPAR yes 64190729
chr5 90602616 90602631 FOXP1 JASPAR yes 64190730
Genes associated with rs552588368[chr5:90602616], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More