EnhancerDB
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  3. rs552642436[chr1:180494476]
Enhancers that have rs552642436[chr1:180494476]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 180482964 180504974 enh12423
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Heart
Transcript factors that have rs552642436[chr1:180494476]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 180494227 180494903 ZBTB33 GTRD no Lung (A549) 107847810
chr1 180494292 180494979 ZNF274 GTRD no Bone Marrow (K562) 21353350
chr1 180494292 180494979 ZNF274 GTRD no Bone Marrow (K562) 107847811
chr1 180494380 180494728 ZBTB33 GTRD no Brain (SK-N-SH) 21353351
chr1 180494380 180494728 ZBTB33 GTRD no Brain (SK-N-SH) 107847812
chr1 180494396 180494812 ZNF274 GTRD no Cervix (HeLa-S3) 21353352
chr1 180494396 180494812 ZNF274 GTRD no Cervix (HeLa-S3) 107847813
chr1 180494404 180494919 ZNF274 GTRD no Bone Marrow (K562) 21353353
chr1 180494404 180494919 ZNF274 GTRD no Bone Marrow (K562) 107847814
chr1 180494405 180494693 ZNF274 GTRD no Blood (GM12878) 107847815
chr1 180494410 180495035 ZNF274 GTRD no Blood (GM12878) 107847816
chr1 180494465 180494883 ZBTB33 GTRD no Brain (SK-N-SH) 21353354
chr1 180494467 180494482 MEF2A JASPAR yes 33521086
chr1 180494469 180494481 MEF2A JASPAR yes 33521087
chr1 180494469 180494481 MEF2B JASPAR yes 33521088
chr1 180494469 180494481 MEF2D JASPAR yes 33521089
chr1 180494470 180494480 MEF2A JASPAR yes 33521090
chr1 180494472 180494485 HNF1B JASPAR yes 33521091
Genes associated with rs552642436[chr1:180494476], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More