EnhancerDB
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  3. rs552685307[chr16:85581627]
Enhancers that have rs552685307[chr16:85581627]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85541745 85623813 enh16872
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs552685307[chr16:85581627]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85580040 85582876 ZNF143 GTRD no Epithelial (MCF-7) 21728618
chr16 85580440 85582297 ZNF274 GTRD no Bone Marrow (K562) 21728625
chr16 85580739 85582335 ZNF274 GTRD no Bone Marrow (K562) 21728627
chr16 85580920 85581803 ZNF274 GTRD no Bone Marrow (K562) 21728640
chr16 85580931 85581924 ZNF143 GTRD no Epithelial (MCF-7) 21728641
chr16 85581354 85581870 ZNF274 GTRD no Bone Marrow (K562) 21728642
chr16 85581547 85584240 TCF7L2 GTRD no Colon (HCT116) 21728643
chr16 85581606 85582653 TCF7L2 GTRD no Colon (HCT116) 21728644
chr16 85581622 85581627 GATA2 JASPAR yes 12074986
Genes associated with rs552685307[chr16:85581627], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More